smoothing_cxx_module.cc

/*
 *  This file is part of Healpix_cxx.
 *
 *  Healpix_cxx is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  Healpix_cxx is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with Healpix_cxx; if not, write to the Free Software
 *  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
 *
 *  For more information about HEALPix, see http://healpix.sourceforge.net
 */

/*
 *  Healpix_cxx is being developed at the Max-Planck-Institut fuer Astrophysik
 *  and financially supported by the Deutsches Zentrum fuer Luft- und Raumfahrt
 *  (DLR).
 */

/*
 *  Copyright (C) 2005-2017 Max-Planck-Society
 *  Author: Martin Reinecke
 */

#include "xcomplex.h"
#include "paramfile.h"
#include "healpix_data_io.h"
#include "alm.h"
#include "healpix_map.h"
#include "healpix_map_fitsio.h"
#include "alm_healpix_tools.h"
#include "alm_powspec_tools.h"
#include "weight_utils.h"
#include "fitshandle.h"
#include "levels_facilities.h"
#include "lsconstants.h"
#include "announce.h"

using namespace std;

namespace {

template<typename T> void smoothing_cxx (paramfile &params)
  {
  int nlmax = params.template find<int>("nlmax");
  string infile = params.template find<string>("infile");
  string outfile = params.template find<string>("outfile");
  bool polarisation = params.template find<bool>("polarisation");
  int num_iter = params.template find<int>("iter_order",0);
  double fwhm = arcmin2rad*params.template find<double>("fwhm_arcmin");
  if (fwhm<0)
    cout << "NOTE: negative FWHM supplied, doing a deconvolution..." << endl;
  bool do_pwgt = params.param_present("pixelweights");
  planck_assert(!(params.param_present("ringweights")&&do_pwgt),
    "both pixel and ring weights specified");
  planck_assert((num_iter==0)||(!do_pwgt),
    "iterative analysis cannot be done in combination with pixel weights");

  if (!polarisation)
    {
    Healpix_Map<T> map;
    read_Healpix_map_from_fits(infile,map,1,2);

    tsize nmod = map.replaceUndefWith0();
    if (nmod!=0)
      cout << "WARNING: replaced " << nmod <<
              " undefined map pixels with a value of 0" << endl;

    double avg=map.average();
    map.Add(T(-avg));

    if (do_pwgt)
      {
      auto pwgt = read_fullweights_from_fits(
        params.template find<string>("pixelweights"), map.Nside());
      apply_fullweights(map,pwgt);
      }

    arr<double> weight;
    get_ring_weights (params,map.Nside(),weight);

    Alm<xcomplex<T> > alm(nlmax,nlmax);
    if (map.Scheme()==NEST) map.swap_scheme();

    map2alm_iter(map,alm,num_iter,weight);
    smoothWithGauss (alm, fwhm);
    alm2map(alm,map);

    map.Add(T(avg));
    write_Healpix_map_to_fits (outfile,map,planckType<T>());
    }
  else
    {
    Healpix_Map<T> mapT, mapQ, mapU;
    read_Healpix_map_from_fits(infile,mapT,mapQ,mapU);

    tsize nmod = mapT.replaceUndefWith0()+mapQ.replaceUndefWith0()
                +mapU.replaceUndefWith0();
    if (nmod!=0)
      cout << "WARNING: replaced " << nmod <<
              " undefined map pixels with a value of 0" << endl;

    double avg=mapT.average();
    mapT.Add(T(-avg));

    if (do_pwgt)
      {
      auto pwgt = read_fullweights_from_fits(
        params.template find<string>("pixelweights"), mapT.Nside());
      apply_fullweights(mapT,pwgt);
      apply_fullweights(mapQ,pwgt);
      apply_fullweights(mapU,pwgt);
      }

    arr<double> weight;
    get_ring_weights (params,mapT.Nside(),weight);

    Alm<xcomplex<T> > almT(nlmax,nlmax), almG(nlmax,nlmax), almC(nlmax,nlmax);
    if (mapT.Scheme()==NEST) mapT.swap_scheme();
    if (mapQ.Scheme()==NEST) mapQ.swap_scheme();
    if (mapU.Scheme()==NEST) mapU.swap_scheme();

    map2alm_pol_iter
      (mapT,mapQ,mapU,almT,almG,almC,num_iter,weight);
    smoothWithGauss (almT, almG, almC, fwhm);
    alm2map_pol(almT,almG,almC,mapT,mapQ,mapU);

    mapT.Add(T(avg));
    write_Healpix_map_to_fits (outfile,mapT,mapQ,mapU,planckType<T>());
    }
  }

} // unnamed namespace

int smoothing_cxx_module (int argc, const char **argv)
  {
  module_startup ("smoothing_cxx", argc, argv);
  paramfile params (getParamsFromCmdline(argc,argv));

  bool dp = params.find<bool> ("double_precision",false);
  dp ? smoothing_cxx<double>(params) : smoothing_cxx<float>(params);

  return 0;
  }